NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224534_1011314

Scaffold Ga0224534_1011314


Overview

Basic Information
Taxon OID3300022524 Open in IMG/M
Scaffold IDGa0224534_1011314 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2733
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001528Metagenome / Metatranscriptome677Y
F005822Metagenome / Metatranscriptome389Y
F011771Metagenome / Metatranscriptome287Y
F014867Metagenome259Y

Sequences

Protein IDFamilyRBSSequence
Ga0224534_10113142F001528AGGAGMSERNQVVVVLIVALLLGAFVDRSTALKIVAGVALLWTLQNQSTVFECVRKLFSLRREGLSVREYRGGTTTVHAS
Ga0224534_10113143F005822GGAGMKSSEQTIASTGPESIADSKTTQPPAGEGKRARAVRDAQATPPRSAAIRRRRSRHDNSETAGEERFFLASGSGNGDVPALGRECGSEAEAIIDAFRERVNFYTVSEFQTRADVGPAGEPILRKDGLKKNNLAS
Ga0224534_10113144F014867GAGGMRLLFPSSYDRADLLMSAGCCTFVSAALIVVIPRLGILLLELLLGLFFIGCALVARKRLRRQARSKDGSDKAKDARTRRLDRYDVFMILAVILVQTSAAGSLRRAGLSEGTVGILPLFLFAAGILLKPRAVEFVEARRKNKQDGRGSTNVGPDLAGAAPAPSSEARARAVVGAAAQNGDL
Ga0224534_10113145F011771AGGAGGMDPKARQEGENSRASGPARFGGLDQLDWLMIVISVLLGTVARRYHFLGLPDRFLEWVLPFLLMAAGYRARRKVTELIESRRAKAKRPTGK
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