NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242656_1010923

Scaffold Ga0242656_1010923


Overview

Basic Information
Taxon OID3300022525 Open in IMG/M
Scaffold IDGa0242656_1010923 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1214
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001693Metagenome / Metatranscriptome651Y
F006729Metagenome / Metatranscriptome366Y

Sequences

Protein IDFamilyRBSSequence
Ga0242656_10109231F001693GAGVLTPNGETISQYTSGLPNHFAPPPECPQGGGYLIGWVINPANDKPIKFDGLIGDAHLRPGPAALADYNAIPIQAVPGLAPGAPIIVGPNGELFFDGDDNHYQAVSGQVLGDVRYSNLTTGPTFTQGLLTLLTLDVKSNRPNNPTFVDLDFFGGNPSAIGNENQLSTSTEFICWQQVALPAINSSLTTAVMGRKGVFVSDQAVKVGIAGIVDTIGPVTLLGLSEVLEGGVFPPAAPWPRASFSSLFNSSVPEPTTFVPTRSPNFLP
Ga0242656_10109232F006729N/AMKFKTRGARLAGLLVPALALAAPAFAQVRDTRLSDATEPGSVIVFPKFINGSAYIVPESVPAPATELEIGVVCPKGATCPEHMPVKIRFHWVCGTNQAAEATSFCLQRNRLRHHQYGI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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