NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224533_1000054

Scaffold Ga0224533_1000054


Overview

Basic Information
Taxon OID3300022526 Open in IMG/M
Scaffold IDGa0224533_1000054 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E1 10-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14357
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003764Metagenome469Y
F003942Metagenome460N
F004301Metagenome / Metatranscriptome444Y
F042119Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0224533_100005416F003942GGAGMLGHRLNPAIHCYEDVELIEVHSEYLECSFVVARDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEIQRQAGHSIYADQLSAMLYGAGLNPARS
Ga0224533_100005417F042119GAGMNTIIREVNPARLAWGIFDHAKSGYMNEGDIPASYSGDCIAMGQPVRKPFRMDGEMWVAIGLSNDGARAYRLCPMRIFNGTPTNYRDKSGSAEHAEEARNDPNGFYDRMTVKHGGQQFVLCGPEVKIVASQQEDVPAPQVQLALF
Ga0224533_100005418F003764GAGMQIQLDSPYANDENPAALLAGAEIEAAGLHRCLKIVRLWSQSNALPRPRREEIIEEEQRLANLYAAILFEIGSAFGLRAADELKVRIEAACILDDWECPPAEQGFLFPIPNYSATEASPATARK
Ga0224533_100005419F004301GGAGMNAMQFSLFDARAAAATVGMEPSVNARNAKRQLDTLRKQLATAQADLEDVDYNLSIVAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLLFTLNAERRDVLSAIADIEPKVAALSQIIGNAIQ
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