NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224533_1014887

Scaffold Ga0224533_1014887


Overview

Basic Information
Taxon OID3300022526 Open in IMG/M
Scaffold IDGa0224533_1014887 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 E1 10-14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1365
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004581Metagenome432Y
F014350Metagenome / Metatranscriptome263N

Sequences

Protein IDFamilyRBSSequence
Ga0224533_10148871F014350N/AHSATSTIQGTNPQQELDALENQAEAPTKGSYLREKDGYDALSPEQKAVCDKDFNSYLDRFTSPLEAQVGETREDAILRAKKEYCAARQEHTAHHREIAKTMLASKINCLNDKYPRDSFSLLKPDVAKEFMATAFYHHAAASKELKSFDKDVFATCKKAALREFSALSAGIESGAAGAKDFNNTFTINIERPPIAALNQNLRIAVKPLPEKREELAAIFGKCAWYHSNQSGRTPEEREQRRAARAKTTQGLER
Ga0224533_10148872F004581AGGAGGMKQSEIYNGHAGRFHRMAEHIELSMTPQHQQRHGGPDPITTNDITLATTLMNSVYGYPAGKQAVLDLSAGMIPGEERFQTVRGLFMMTAGCSEYDQTVKYTILPLPNREMETAKLFKAAAAYSLERAEVHSRNIPLPTRVAVQLER
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