NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242660_1004310

Scaffold Ga0242660_1004310


Overview

Basic Information
Taxon OID3300022531 Open in IMG/M
Scaffold IDGa0242660_1004310 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2118
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005560Metagenome / Metatranscriptome396N
F054748Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0242660_10043102F054748AGGMTTEDSPTPDASSKRLTEVILKGEEQDAARIAGEIAGGNTQTNDLVDAISETMNIVADLHDVERYTVQQVESCERAAESALNAIRPGLKVEKRKIRGRVMVTSLHGDPHTFDKTLLLTMLELGGFSALDGGEELSPEEVVRNVKSLKPDVLAIPLVTASAVNDLLRTRSLLANSGVKTKLVTYGRGVVKLPSDSQFTAMEEDSLSILSRIAEILIAL
Ga0242660_10043103F005560N/AGTTTYKRMFLRWEILRGWMPAIVFAAVAVAIELLYFNYMVSRGLIDEAFTISLGALRIPLSIALFVSLANAVVLLTLWMSVFENTAFVMAGPDRRVRRILYPLRMVRAAAIVLTPFTIVLFTPYIVESSWFISAVASASNAVPSLRQTAVNFYTWSFGLARMDYSVKFVVSQLSAAVSSTVVSGLLLWRVKGTRNLMLALRRKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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