NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224452_1000028

Scaffold Ga0224452_1000028


Overview

Basic Information
Taxon OID3300022534 Open in IMG/M
Scaffold IDGa0224452_1000028 Open in IMG/M
Source Dataset NameGroundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22363
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9201Long. (o)-106.9487Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005486Metagenome / Metatranscriptome399Y
F009803Metagenome / Metatranscriptome312Y

Sequences

Protein IDFamilyRBSSequence
Ga0224452_10000283F009803GAGGVRHAWSCLAGLVAASPVAAQLSARTDVSVAGRYVWHGISRAAGLVAQPSLAFGLRVQRLSLESGAVLHYELDAASSGELSETGAGGRHLGEQDVWGAASFVLGPTRLHAGVVRYAFRGDSSTGGVGSARNTTEVFASVSTTSRYLNPSLEAWWDVERVRGAFLRASLDLPVLGWPFPPYAFVFVQTELGMNIGQGPNPTRPGELANFAKRGITHFGLGLGTEVRAGRVATLAFGARSQLNVDAAAKADGPGRTRDFVVWLWSGVTIVLGRNERGQ
Ga0224452_10000285F005486AGGAGGMRRITLLSLVSLVAPVVLVAQQTAAPHDSVRGAIRAVDTRARTLEVTTGVGFALRVVRLQVPATVPITDRKSAQGAPINLAELKPGDVIRVSFGSRPTGLVAYAIERVGRMDAGVEPTP
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