Scaffold Ga0212122_1088270

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212122_1088270

Scaffold Ga0212122_1088270

Overview

Basic Information
Taxon OID	3300022546 Open in IMG/M
Scaffold ID	Ga0212122_1088270 Open in IMG/M
Source Dataset Name	LHC4_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	595
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	USA: California, Little Hot Creek
Coordinates	Lat. (^o)	37.6906	Long. (^o)	-118.8442	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103293	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212122_10882702	F103293	AGAAGG	MALDLERLPWLEPPYEIYEFKPAEPAVFHITAYKIGKMRIVPRWPGAPPEKLVIAIRLYVDPATKPAYPHYYDITPSRLVHQLSNLLTQGIPPGMALRITRDTPGPKAHFTVEWTPK

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