NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212126_1185957

Scaffold Ga0212126_1185957


Overview

Basic Information
Taxon OID3300022547 Open in IMG/M
Scaffold IDGa0212126_1185957 Open in IMG/M
Source Dataset NameWilbur_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)536
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.0314Long. (o)-122.4323Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091298Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0212126_11859571F091298N/ALWVASPGQALEHLSVGEPIQNMQITDLLDLDPLVVSRWLCGEDMRGIYQPIVVRHSALDGLDLEGRTFYEIVELVDCRIATAHFKYAYFYSSLLVEDCVFGGDFEGRGLQGDGRMVFHNTIFAGWADFSGISVRGRADLVDVSFPGGTNLLRILSNGSRALLGHEINFSRCRFRPVDI
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