NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212092_1010806

Scaffold Ga0212092_1010806


Overview

Basic Information
Taxon OID3300022548 Open in IMG/M
Scaffold IDGa0212092_1010806 Open in IMG/M
Source Dataset NameCone Pool_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6730
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Candidatus Thermofonsia → Candidatus Thermofonsia Clade 3 → Candidatus Thermofonsia Clade 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.4127Long. (o)-118.504Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008994Metagenome / Metatranscriptome324N
F040512Metagenome / Metatranscriptome161N
F044342Metagenome / Metatranscriptome154N
F049463Metagenome / Metatranscriptome146N
F057955Metagenome / Metatranscriptome135N
F068330Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0212092_101080610F008994AGGAGMRVTRFAVDNNGRALFPDYFIINEQNGTALAFYSAYFDTNEIVQEGLQLTPWLSSRWRGTTVPFAQWRDAFVSVGHSFPQYHAQIAPNVRTSELVDINRAFVELFMNGVNLADPAIAETHMQLMTEKNIDLVDFLSS
Ga0212092_10108063F044342AGGAGMNDPVIPVTMHLPKSVVERFKAKAVELIPEEKEEAPSLLLTLFINYMSSDDYWCLFIPDLSRQDYKKWQEMANQVYDALYETVKYHGAGALPGEMADFAQAVIQQRRMTPDDLIKLIIISARYNQITWTKNDTSKGFNVPSQ
Ga0212092_10108064F049463GGAGMRRTSGRESLKQSESLSQAQVRELQSVLPKVPVYILGKTPLIHDLNAFLDQFGCQTDLTLLRPVKVWANLEEDIVNEADKVIDCFVPDDLKSLIIVVILPPLVALAAALVARLKERCPTLKVLVVHYRVEHEPHFLGFELFCG
Ga0212092_10108066F068330AGGAGMNDKWIKRLNQFVESDNLIKVGIGLFLFALWAALYELGMQYNQGALLSVIVATGMVVVLVAHGIMACQPVPQMRLAHGSAFALHMVIAIALSAFYVLSKAPELERQVVNLIGEFVTLGRTFYAALFGIAIAISLSAYIVSLSAKNPVTGSQQAIASLATNIAIVLAIITSSIHLYQFGAEIANLDLLSRLSATIMADISFIAIKSNIQHQIERRQKSGQYDYFDLIVWAVFGILVSIYLILINSFVVSYSAGTARDSSLLSLVVSLYGMSPTVLLAGLASLTVLTKVVDRQTASPKSNGQRLDEFAANGIAGRQGVKV
Ga0212092_10108068F040512AGAAGGMIDLISTASVAGLSVLSARYLEHAAWFQRLQPESKRLVAVAVAALIALALHMLQAIYSEASDIKAAFSTALAVVLQQVYHALTKEDAE
Ga0212092_10108069F057955N/AMIDLFEFFSNYGVLGITALISMSLSLWLLRENQKTLDQCNARVDKLIETHIRFVENVTDKMDELLNDISRLIEKAEITISELERAAKKGNE
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