NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212089_10011670

Scaffold Ga0212089_10011670


Overview

Basic Information
Taxon OID3300022551 Open in IMG/M
Scaffold IDGa0212089_10011670 Open in IMG/M
Source Dataset NameBoni_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5954
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameIndonesia: Gulf of Boni
CoordinatesLat. (o)-2.75Long. (o)121.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039458Metagenome163Y
F093178Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0212089_100116702F093178N/ALLVAAGVAFFLAWLYMAEFTIYTDMKAALTITTETFGMLLGIITAGLMFTQAKFGELSSELSEKSPHYLADVLSLEKIQSIGNQLLALRKTFTQLAANTTVAEERNLYERIVAKTSLMFANFAVLLNLNLKQHGLPDTGLLISEMDSNIYKVYKKGIKSIKKEWQLFYIIRKTIDMWEAPASFLVEKLKGKSALQADLKGSIFIWKLKGTADKSLVDIRNDVAKTLSNLSDEISEISKRLHEDRIHQLLSQMEQASAVRGKYFYLAVVSITAPLLINLLILPQLTEATAAFFKPIISVTSSLSVIAVVFLLLYIYEILNV
Ga0212089_100116703F039458GAGMLPKIWVQKGYLINSCVISIMGVGALEKTKEEQIKALLEKHSLPPVEVIIPILGKTGRGEQELTAQAYTAYISLTEGIKEILGLKDKNMKTLAKVWEILCGFEGAEFQPIELTESKYSISYPDCYMLHVGKDVSSNVKSKFCDLICAGGSKAIMDSVLGPERGTCTWDKGLIKGAGKCKIVFELAENR
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