NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212089_10074746

Scaffold Ga0212089_10074746


Overview

Basic Information
Taxon OID3300022551 Open in IMG/M
Scaffold IDGa0212089_10074746 Open in IMG/M
Source Dataset NameBoni_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1880
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameIndonesia: Gulf of Boni
CoordinatesLat. (o)-2.75Long. (o)121.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006410Metagenome374Y
F009732Metagenome313Y

Sequences

Protein IDFamilyRBSSequence
Ga0212089_100747463F009732GGAGLKRDLSGVKFEELKGKSFELILIVEMLCEVCEKPLRTREKFLRKTQILSKEDYENLLNRATVHDRVEVDVENSKIYFYDHDFPGDVHPECIEKL
Ga0212089_100747464F006410N/AMKFFPTEVKALSEKSRVDPEKAKEIQERTRERNLILREMKNLGPSTVEELSKATSMEKSKLLKHLIAMNQFGKILILGERDNQLVYGLPEEIKS

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