NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212089_10129842

Scaffold Ga0212089_10129842


Overview

Basic Information
Taxon OID3300022551 Open in IMG/M
Scaffold IDGa0212089_10129842 Open in IMG/M
Source Dataset NameBoni_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1309
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameIndonesia: Gulf of Boni
CoordinatesLat. (o)-2.75Long. (o)121.05Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038042Metagenome166Y
F065350Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0212089_101298422F065350N/AVKLAEEVLRKQSSFEQFCSQFDWYDFKILGSFLTKLDYPLDTTTQSLHSVWQLFMRRGIKVSKMTVCRRLKRFTILGLLRRMPKTNPAFYEIAKGREELVRKIVYFKHTEELLEF
Ga0212089_101298423F038042GAGMKTGPKPIGRLLIPKILQILEEAGYDLRTWTITVRLRQLLNRPRLRWETIHKYLEQMVAAQMIFKYEDPTGIVTYSKNPIVREKVLF

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