NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10000539

Scaffold Ga0212118_10000539


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10000539 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26618
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (89.58%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029623Metagenome187Y
F029954Metagenome186N
F035145Metagenome172Y
F050065Metagenome145Y
F084954Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000053926F029954AGGMELRVREYKFNDGEKKVEYVIPPTNTPFFSVVFSKKGEVRMVAIHQRVLEYHEAVVLMSLLCGVIKNEERIQ
Ga0212118_1000053932F050065GAGVSDVEQVKFVIAYLKGLLRDAKRRGDEEEAMYIEEVIGVYEARLQSQNNNN
Ga0212118_1000053933F035145AGGAGGLKKLSEFMRRDYNLKTIITEECCELVRVEVICFTANTSFPLLTLSYNKCTKHFVLAIERRFVTQKSTLQALTEALEKVKKVMKDGKVE
Ga0212118_1000053938F084954GAGGMRRVANFLRNVGRSLKEVLTHKSKGYNDMVMMATAIISTVVVAIIGVYISSQIWNTAQLDSSSPFNTAMNAAINIMNTTFPLIVVVAIAIIAGVIMTYLLGGFGIAGGGKKGE
Ga0212118_1000053940F029623GGAGGMKNVYAKYVRARLEQGNLIIEISKDAFKNDEAKKETVKELKQLIKTYFGLRFFIRLSVVYALTALFCASVALAIVLVK
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