NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10000632

Scaffold Ga0212118_10000632


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10000632 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24913
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (93.33%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F014691Metagenome260N
F015290Metagenome255N
F017081Metagenome242Y
F019588Metagenome228N
F023017Metagenome211Y
F024453Metagenome205Y
F029623Metagenome187Y
F029954Metagenome186N
F035145Metagenome172Y
F040421Metagenome161Y
F046123Metagenome151Y
F049343Metagenome146Y
F050065Metagenome145Y
F055335Metagenome138N
F066330Metagenome126N
F072934Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_100006321F066330AGAAGGMAEEEKRKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVRDAIKKAVEEVLQQQK
Ga0212118_1000063210F050065GGAMNMLKATVSMEQQILLAIAYLKGLLRDAKRRGDEELVKYVGEIIGVYEARLQPQNNNN
Ga0212118_1000063211F035145AGGAGMLEKLSEFMRRDYNLKTIITEECCDLVRVEVIYLTARTSFPLLSLTYNKHTDNFILTIERKFITQHSTLKALIEALESVREVVKGNASF
Ga0212118_1000063213F049343AGGAGGMEWSRLRDKLRKGEWHIFSVVCFLAGVVAGREMTLLAKPEPILALIGIGIGVLAYLLLLLTATIIADIKERRKEAPKTI
Ga0212118_1000063215F029623GAGMNTYAKYVRARFERGNLIVEVSKDAFKDAEAKKEATKELQQIIKTYFGIRFFIRLSIVYAFTAFFCAFVALIIVLLK
Ga0212118_1000063217F023017GAGMRLKKEKREEMKQKIIEFLKNAEGHIASIPMLAKAIHASSPTAKSIVWELEVERKVSVVMLGGQYMVKLEELEEGV
Ga0212118_1000063225F024453AGGAGGVKVEIPDRDAAVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSIYSEEISEVGERVKSVREERREGDMDKVRSVHELAQVRKANAKQ
Ga0212118_1000063226F015290GAGGMLNNKGQAGEIAVFVILAFMIAFAYIFISPIVQNIKDVVPTIADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV
Ga0212118_1000063227F007460AGGTGGMSDEGGIGIGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGVDETSPFAQALTVMPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGGEEWW
Ga0212118_1000063229F055335AGGAGGMRAYDILLFLVCLEATIGFVSSLHVFPVSYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALTMFLNMLVAIVAIYIPLTSVLRVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME
Ga0212118_1000063230F017081GGAGMWKRKWWKGICIFIVLAFLITTAQAIDITHVTITSPTTIRIVIENANSSGYIFISPTNTSFPYAFSHQGNGTYTITTTFLKPAIWYFKACDNSGCSNVISVDVSAKEQLMEQNFTSQFNTLMQSGNFLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGLITGSVLIVMLSPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_1000063232F014691AGGAMERRGWWIVRGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVGAR
Ga0212118_1000063233F040421GGTGGMREERVRAITMLTLAFVIGFKSIILFLQHSFGFAFALFLLAWTCICLAFPDNLIGVSIGQDLKLGEVIEKWVRRRELKRK
Ga0212118_1000063234F019588GGAGGMGEEKRIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKIGVPVKDLLK
Ga0212118_1000063238F072934AGGGGGMVEIDIEKLLADEEIREKMNEWVREKAKRRLESMKNLSEPHRRYLEKIASGEWEVW
Ga0212118_1000063244F046123AGAAGGMCWLCWYWIEAEERCIFDEDDPEREFLLIDEFKDIDLKIYKERMEWLKGLGLMSLYRAVKAGMVKEQRTLGDFGLAVMSHE
Ga0212118_100006326F029954AGGMELRTKEYKFNDGERKVEYVIPPTNTPFFSVVFGKKGEVRMIAIHQRVLGYHEAVVLMSLLCGVIKNEEGIQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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