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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022552 Open in IMG/M |
| Scaffold ID | Ga0212118_10000677 Open in IMG/M |
| Source Dataset Name | Guaymas_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24259 |
| Total Scaffold Genes | 41 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (90.24%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin, Gulf of California | |||||||
| Coordinates | Lat. (o) | 27.0078 | Long. (o) | -111.4071 | Alt. (m) | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007460 | Metagenome | 350 | N |
| F014691 | Metagenome | 260 | N |
| F015290 | Metagenome | 255 | N |
| F017081 | Metagenome | 242 | Y |
| F019588 | Metagenome | 228 | N |
| F019935 | Metagenome | 226 | Y |
| F023017 | Metagenome | 211 | Y |
| F024453 | Metagenome | 205 | Y |
| F035145 | Metagenome | 172 | Y |
| F049343 | Metagenome | 146 | Y |
| F050065 | Metagenome | 145 | Y |
| F066330 | Metagenome | 126 | N |
| F072934 | Metagenome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212118_1000067710 | F023017 | GAG | MRLKREKREEMKQRIIEFLKNADGHIATIPMLAKAIQASSPTAKSIVWELEVERKVSVVMLGGEYVVKLEEGVIKDDY |
| Ga0212118_1000067719 | F024453 | AGGAGG | VKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSIYSEEISEIGEEVKSVREEGREGDMEKVRSVHELAQVRRANAKQ |
| Ga0212118_1000067720 | F015290 | AGGAG | MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVIPTIADATTWTNAQTQAMNWLFRAWYAYPFFAFIALLVWLIKRAIEKRSGEVV |
| Ga0212118_1000067721 | F007460 | AGGTGG | MDDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTNVVGISETSPFTQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGGEEEW |
| Ga0212118_1000067724 | F017081 | GGAG | MEERRRKWWWKGVCIFTVLAFLIATTQAIDITEITATETQIKIIIANATSSGYIFVSPSNTFFPYAYSHQGNGTYTITATFLKVNTTYYVKVCDNENCSNVVSVNVSKEGELLEQNFTAPFNNLMQGGNLLNVSKLGEIIPSVYTSLLTDMFWAMLFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR |
| Ga0212118_1000067727 | F014691 | AGGAGG | MSKGIGFVSAILILMFTVVAVFTLSIAWSEIPVEPQANTSLANTSSIIPTLTSFLPYIALVVILAMAIGVFLSLVRMR |
| Ga0212118_1000067729 | F019588 | GGAGG | MSEEKRIEEEVEQILKDLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGLPVKDLLK |
| Ga0212118_100006773 | F050065 | GGA | MNMLKATASIEQIILAIAYLKGLLRDAKRRGDEELVKYVGEIIGVYEARLQPQNNNN |
| Ga0212118_1000067733 | F072934 | GAGG | MVEIDIDKLLADEEIREKMNEWSREKAKRRLESMKNLSEPHRRYLEKIASGEWKVW |
| Ga0212118_1000067735 | F019935 | N/A | MPKVKETANRTVVHVGDLWRRYHRALPKTKRRWKFRIKDVGRLRHSELILCKPPNGKWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENGDLRGWKLAFKG |
| Ga0212118_100006774 | F035145 | AGGAG | MLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARASFPLLSLTYNRHTDNFVLTIERKFITQHSTLKALIEALESVREAVKGNASF |
| Ga0212118_1000067740 | F066330 | AGGAGG | MAEEEKRGKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSKFVRDAIKKAVEEVLQARSE |
| Ga0212118_100006776 | F049343 | AGGAGG | MEWSRLRDKLRKGEWYAFSAVCFIAGVVAGKGITVLGRAEPVLALTAVGAVLLAYWLALLTATIIAEIKEAPKTI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |