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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022552 Open in IMG/M |
| Scaffold ID | Ga0212118_10000777 Open in IMG/M |
| Source Dataset Name | Guaymas_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22788 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (90.70%) |
| Novel Protein Genes | 13 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 12 (92.31%) |
| Associated Families | 13 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin, Gulf of California | |||||||
| Coordinates | Lat. (o) | 27.0078 | Long. (o) | -111.4071 | Alt. (m) | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014691 | Metagenome | 260 | N |
| F015290 | Metagenome | 255 | N |
| F017081 | Metagenome | 242 | Y |
| F019588 | Metagenome | 228 | N |
| F023017 | Metagenome | 211 | Y |
| F024453 | Metagenome | 205 | Y |
| F029954 | Metagenome | 186 | N |
| F035145 | Metagenome | 172 | Y |
| F040421 | Metagenome | 161 | Y |
| F049343 | Metagenome | 146 | Y |
| F050065 | Metagenome | 145 | Y |
| F055335 | Metagenome | 138 | N |
| F066330 | Metagenome | 126 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212118_100007771 | F066330 | AGG | MAEGEKRKVVVSVALSVDEYLRLEEAVMRKYGRKWGVFSKFVREAIKKAVEEVLQQQK |
| Ga0212118_1000077711 | F050065 | GGA | MNMLKATVSMEQQILLAITYLKGLLRDAKRRGDKELVRYVGEIIGVYEARLQSQNNNN |
| Ga0212118_1000077712 | F035145 | AGGAG | MLEKLSEFMRRDYNLKTIITEECCDLMRVEVICLTAKTSFPLLSLTYNKHTDNFILTIERKFITQHSTLKALIEALESVREVVKGNASF |
| Ga0212118_1000077714 | F049343 | GGAG | MTRWSRLRDKLRKGEWHIFSVVCFLAGVVAGREITLLAKPEPILALIGIGIGVLAYLLLLLTATIIADIKERRREAPKTI |
| Ga0212118_1000077720 | F023017 | AGGGGG | VRLKKEKREEMRQKIIEFLKNADGHMASIPMLARAIQASSPTAKSIVFELEVERKVTVVMLGGEYIVKLEEGGERV |
| Ga0212118_1000077729 | F024453 | AGGAGG | VKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVEEGGESGREGGGEEDMEKVRSVHELAQVRRANAKQ |
| Ga0212118_1000077730 | F015290 | AGGAG | MLNNKGQAGEIAVFVILVFVVAFAYIFISPIVQNIKDVVPVIADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV |
| Ga0212118_1000077733 | F055335 | AGGAGG | MRAYDILLFLVCLEATIGFVSSLHVFPVNYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFLNMLVAIVAIYIPLTSVLGVPSEIALLLQGVVYVVYMWAIIQFLSGRSVKYME |
| Ga0212118_1000077734 | F017081 | N/A | MEERGRKWWRRGVCILGILTFLIATAQAIDITEITATETQIKITIANATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKPNNTYYVKACDNENCSNVMSVNISKEEKLVEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGSVLIVLLPPSAQHIAYILLVISIAGTLYTIIKARR |
| Ga0212118_1000077737 | F014691 | AGGGGG | MKGIGFVSAILILMFIVVAVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVRVR |
| Ga0212118_1000077738 | F040421 | GAGG | MREEGVRAITMLTLAFTIGFKSIILFLQHSFGFAFTLFLLAWTCICLAFPDNLIGASIGQDLKLEEVIEKWERRRELRRK |
| Ga0212118_1000077739 | F019588 | AGGAGG | MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRGGRGNLVKGMQKTIEVLDRKIGIPVKDLLK |
| Ga0212118_100007777 | F029954 | GAGG | MELRTKEYKFNDGERKVEYVIPPTNTPFFSIIFGKRGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEERIQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |