NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10000842

Scaffold Ga0212118_10000842


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10000842 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22045
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (87.88%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023017Metagenome211Y
F029623Metagenome187Y
F035145Metagenome172Y
F042112Metagenome158N
F084954Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000084216F035145AGGAGMSEKLSEFMRRDYNLKTIITEDEFVRTYEVICFTSNTSFPLLTLTYNRCRHEFLLTIERKFITQHSTLKALIEALENVREVMKGNACF
Ga0212118_1000084222F084954GAGGLNFLRKVKNVLADKRGYNDMVIMATAIITTVVVAIIGVYISSQIYDVTNLESGSPFNTAMNAAINIMNTTFPLIVVVAIAIIAGAIMTYLLGGFGIAGGEKGKKGE
Ga0212118_1000084225F029623GAGMNTYTKYVRARLEQGNLIIEVSKDAFKSDEAKKETVKELKQIIKTYFNLRFFIRLSIVYAFTALFCACVALVIVLVR
Ga0212118_1000084228F023017AGGAGGMRLKKEQREEMKQKIIEFLKNVNGHIASIPMLAKVIKASPPTTKSIVGELEVEKKVKVTTLGGVYVVQLKEEVNDYE
Ga0212118_1000084233F042112AGAAGGMNFNDYSPTSLPSEEEKYISKLAYPHLLFIQIQRIMDAINVGDDGKEELENLKTLLKPSWREEIDAKMEKHKKKMEQEIERISRMKEKIGIATYREMKRREIVEYVRRYVQYVIEKLDEVGLLLVEERTVLR
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