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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022552 Open in IMG/M |
| Scaffold ID | Ga0212118_10001109 Open in IMG/M |
| Source Dataset Name | Guaymas_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19215 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (90.00%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin, Gulf of California | |||||||
| Coordinates | Lat. (o) | 27.0078 | Long. (o) | -111.4071 | Alt. (m) | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007460 | Metagenome | 350 | N |
| F017081 | Metagenome | 242 | Y |
| F019588 | Metagenome | 228 | N |
| F019935 | Metagenome | 226 | Y |
| F023017 | Metagenome | 211 | Y |
| F024453 | Metagenome | 205 | Y |
| F040421 | Metagenome | 161 | Y |
| F056226 | Metagenome | 137 | N |
| F072934 | Metagenome | 120 | N |
| F091134 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212118_100011091 | F091134 | N/A | RSPSSSFFIQSFLAFVYLSCATAPALLNFNIKKHADIIALAAPYTVLVAFASQLPQAHGRYYECLIPFLLIPAFDEFARTRAKTTALCILAYFFFALPTLIHADLVNASLTLPITLSTAFTPLTVFAIAFALLYAYILTKSEKWRYGIALTLLAFVLIGSSATNLYNMHKISTAERECVVFNFLKQHSGEGAAFIADKEEWWANYCLCCFYAQNFLPLKIFSNTTKYLIVEKAGLDEGQKHIARLEGCCENDEVLVVEMVRWDEVKEGEKRRNEAKDS |
| Ga0212118_1000110912 | F024453 | AGGAGG | VKVEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVGEEGESVREEGREGDMEKVRSVHELAQVRRANAKQ |
| Ga0212118_1000110914 | F007460 | AGGTGG | MDDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGIDETSAFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQYQEEEEEM |
| Ga0212118_1000110916 | F056226 | AGGAGG | MRAYDILLFLVCLEASIGFVASIDLFSTTYVDPSAVQLTDWNVQEIQNQSSEPSLLDTATDAFVRAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME |
| Ga0212118_1000110917 | F017081 | GGAG | MEERRRKWWWKGICILGTLILLVATAQAIDITEITATETQIKITIANASSSGYIFVSPSNTSFPYTYPHQGNGTYTITATFLKPNNTYYVKACDNENCSDVMSVNVSKKEKLVEQNFTTQFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWGLFFGGIFLAYWIRQEDVMLPSIVGLISGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR |
| Ga0212118_100011092 | F023017 | GAG | MRLKKEKREEMKRKILEFLKNAEGHIASIPMLARAIQASSPTAKSIVWELEVERRVSVVMLGGEYVVKLEEGGERV |
| Ga0212118_1000110920 | F040421 | GAGG | MREKRVRVITMLTLAFIIGFKSIILFLQHSFGFALALFLLAWTCICLAFPDNLIGASIGQDLKLGEVIRRWAKKRELKRK |
| Ga0212118_1000110921 | F019588 | GGAGG | MGEEERIEEEVKEVLERLKVPYSAEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKIGIPVKDLLK |
| Ga0212118_1000110925 | F072934 | AGGAG | VVEIDIDKLLADEEIRKKMNEWNREKAKRRLETMKNLSEPHRRYLEKIASGEWKVW |
| Ga0212118_1000110927 | F019935 | AGG | MPKVKETANRTVVHVGDLWRRYYRASPKTKRRWKFRIKDVGRLRHSELILCKPPNGDWQTYAWSFSKGQVRRGRRKLLIYDAKAFEILQKLKENGDLRGWKLAFKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |