Scaffold Ga0212118

Basic Information
Taxon OID	3300022552 Open in IMG/M
Scaffold ID	Ga0212118_10001502 Open in IMG/M
Source Dataset Name	Guaymas_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022552 Open in IMG/M

Scaffold ID

Ga0212118_10001502 Open in IMG/M

Source Dataset Name

Guaymas_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16408
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (87.10%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (100.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

16408

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (87.10%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin, Gulf of California

Coordinates

Lat. (^o)

27.0078

Long. (^o)

-111.4071

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F040421	Metagenome	161	Y
F056226	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000150211	F014691	AGGGGG	MKGIGFVSAVLILMFVVVGVFTLSIAWSEIPVEPQANTSIATTSNIIPTLTSFLPYLALVVILAMAIGVFLSLVRVR
Ga0212118_1000150212	F040421	GAGG	MREESVRAITMLMLAFIIGFKSIILFLQHSFRFAFTLFLLAWTCIYFAFPDNLIGASIGQDLKLEEVIERWTKKRE
Ga0212118_1000150213	F019588	AGGAGG	MDEEERIEKEVKEVLERLRVPYSVEIVIVDDESGKVVFRWRRGRGNLVRGMQKTIEVLDRKIGIPVKDLLK
Ga0212118_1000150225	F019935	AGGAGG	MPKVKETPNRVVVHVGDLWKKYHRASPKMRKRWKFRIKDVGRTKHSELILCKPPNKDWQVYAWSFSKKQVKKGKRSLLVYDAKAFEILQGLKKSGELRGWRVIFVK
Ga0212118_100015024	F015290	AGGAGG	MLNNKGQAGEIAVFVILVFMITFAYIFISPIVQNIKDVIPIVADATTWTNAQTQAMNWLFRAWYAYPFFAFIALLVWLIKRAIEKRSGEVV
Ga0212118_100015025	F007460	AGGTGG	MSDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTNVVGIGETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEW
Ga0212118_100015027	F056226	AGGAGG	MRAYDILLFMVCLEASIGFVASLELFSTTYVDPSAVQLTDWNVQEIQNQSSEPSLLDTAIDGLVRAIPQFLNMLLAIAIVYIPLTQTLGVPTEIALLFQGAVYLIYVWAIIQFLSGRSVKYME
Ga0212118_100015028	F017081	GGAG	MWRRMWWRGVCIFGILILFIATAHAIDITEITATETQIKITIANATSSGYIFVSPSNTSFPYAYSHQGNGTYTITATFLKVNTTYYVKACDNENCSDVVSVNVSKEEKLLEQNFTSQFNTLMQSGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLFPPSAQHIAYILLVISIAGTLYTIIKARR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212118_10001502

Overview

Ecosystem & Geography

Associated Families

Sequences