NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10001653

Scaffold Ga0212118_10001653


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10001653 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15747
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017081Metagenome242Y
F019588Metagenome228N
F019935Metagenome226Y
F040421Metagenome161Y
F055335Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000165312F019588GGAGGMGEEERIEEEVKRVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPVRDLLK
Ga0212118_1000165313F040421GAGGMREEGVRAIMMLTLAFVVGFKSIILFLQHSFRGAFTLFLLAWTCICLAFPDNLIGASIGQDLKLGEVIEKWAKKRELRRK
Ga0212118_1000165317F017081AGGMERKEVRWWKGICILGMFAFLIASTQAIDITEITVTETQIKITITNATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKPNSTYYVKVCDSESCSNVVSVNVSKEEKLVEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLTYWIRQEDVMLPSIVGLITGSVLIVMLPPSAQHIAYILLVVSIAGTLYTIIKARR
Ga0212118_1000165319F055335AGGAGGMRAYDILLFLVCLEATIGFVSSLHVFPVDYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALTMFLNMLVAIVAIYIPLTTVLGVPLEIALLLQGVVYVVYAWAIIQFLSGRSVKYME
Ga0212118_100016533F019935N/AMPKVKETPNRVIVHIGDLWKKYHRASPKVRKRWKFRIKDVGRTKHSELILCNPPNKDWQVYGWSFSKSQVRKGKRKLIVSDVKAIEILQKLKENGELRGWKLVFRS
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