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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022552 Open in IMG/M |
| Scaffold ID | Ga0212118_10001756 Open in IMG/M |
| Source Dataset Name | Guaymas_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15312 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (79.17%) |
| Novel Protein Genes | 8 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Associated Families | 8 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin, Gulf of California | |||||||
| Coordinates | Lat. (o) | 27.0078 | Long. (o) | -111.4071 | Alt. (m) | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007460 | Metagenome | 350 | N |
| F014691 | Metagenome | 260 | N |
| F015290 | Metagenome | 255 | N |
| F017081 | Metagenome | 242 | Y |
| F019588 | Metagenome | 228 | N |
| F019935 | Metagenome | 226 | Y |
| F046123 | Metagenome | 151 | Y |
| F055335 | Metagenome | 138 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212118_1000175614 | F019588 | GGAGG | MSEERKIKEEAERILKELRVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEILDRKIGIPVRDLLK |
| Ga0212118_1000175616 | F014691 | AGGAGG | MKGIGFVSAILILMFIVVAVFTLSIAWSEIPVEPQANTSIANTSNIIPTLTSFLPYIALVMILAMAIGVFLSLVRVR |
| Ga0212118_1000175618 | F017081 | GGAG | MVERGRKWWWKGVCILGTLVLFIATAQAIDITEITATETQIKITIANASSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKPNSTYYVKACDSENCSDVVSVSVSEKEQLMSQNFTSQFNTLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGLISGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR |
| Ga0212118_1000175619 | F055335 | AGGAGG | MRAYDILLFLVCLEATIGFVSSLHVFPIDYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFFNMLVAIVAIYIPLTTVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME |
| Ga0212118_1000175621 | F007460 | AGGTGG | MGDEEGIGIGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGIDETTPFAQALTVVPNLVNVFFYLPLVFIFTMFVWLFKYIVKRHKYTYYQKGGEEEEW |
| Ga0212118_1000175622 | F015290 | AGAAGG | MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPTIADATSWTNAQTQAINWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV |
| Ga0212118_100017563 | F046123 | GAGG | MEAIKMSCPYKEGSEYCWLCWNWMESAEYCLYDEDDPQREFVLIDEFKNIDPQTYKERLEWIKGLGLLSLYQAVKARTVKGQRKEQRTLSDFGVVMSHE |
| Ga0212118_100017568 | F019935 | N/A | MPKIKETTNRVVVHVGNLWKRYHRASPKTKKKWIFRIKDVGRLKHSELILCKPPNGDWQTYAWSFSKKQVKKGKRKLIVYDAKAYEILQRLKEAGELRGWKLIKR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |