Scaffold Ga0212118

Basic Information
Taxon OID	3300022552 Open in IMG/M
Scaffold ID	Ga0212118_10001798 Open in IMG/M
Source Dataset Name	Guaymas_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022552 Open in IMG/M

Scaffold ID

Ga0212118_10001798 Open in IMG/M

Source Dataset Name

Guaymas_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15146
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (96.15%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

15146

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (96.15%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin, Gulf of California

Coordinates

Lat. (^o)

27.0078

Long. (^o)

-111.4071

Alt. (m)

Depth (m)

2000

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F015290	Metagenome	255	N
F023017	Metagenome	211	Y
F024453	Metagenome	205	Y
F029623	Metagenome	187	Y
F035145	Metagenome	172	Y
F042112	Metagenome	158	N
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000179812	F023017	AGGAG	MKQRIIEFLKNEEGHIATIPTLAKAIQASPPTAKSIVWELEVERRVSVVMLGGQYMVKLEERVIKDDY
Ga0212118_1000179818	F042112	GGA	MTFDEYSSAFPQFEERYISKLAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRREMEREINRIARVKERVGITTYKEMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGVML
Ga0212118_1000179822	F024453	AGGAGG	VKVEIPDRDAAVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSIYSEEISEVMEGGESGREEEIQKDMEKVRSVHELAQVRRANAEQQRAGR
Ga0212118_1000179823	F015290	AGGAGG	MLNNKGQAGEIAVFVILVFMIAFAYIFISPIVQNIKDVVPTVADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIERRSGEVV
Ga0212118_1000179824	F007460	AGGTGG	MDDEEGMGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTNVVGISETSPFTQTLTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW
Ga0212118_100017984	F050065	GGA	MNMLKATVSIEQIMLAITYLKGLLRDAKRRGDRELVKYVGEIIGVYEARLQPQNNNN
Ga0212118_100017985	F035145	GGAG	MLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTVERKFITQQSTLKALIEALESVKEVMQNNGMEQIER
Ga0212118_100017986	F049343	AGGAGG	MEWSRLRDKLRKGEWFAFSAACFLAGVVAGKGITTLGRAEPVLALTAVGAVLLAYWLALLTATIIAEIKEAPKTI
Ga0212118_100017989	F029623	GAG	MNTYAKYVRARFERGNLIVEVSKDAFKDAETKKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCAFVALTIILVM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212118_10001798

Overview

Ecosystem & Geography

Associated Families

Sequences