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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022552 Open in IMG/M |
| Scaffold ID | Ga0212118_10002182 Open in IMG/M |
| Source Dataset Name | Guaymas_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13732 |
| Total Scaffold Genes | 25 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (72.00%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin, Gulf of California | |||||||
| Coordinates | Lat. (o) | 27.0078 | Long. (o) | -111.4071 | Alt. (m) | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007460 | Metagenome | 350 | N |
| F014691 | Metagenome | 260 | N |
| F017081 | Metagenome | 242 | Y |
| F019588 | Metagenome | 228 | N |
| F019935 | Metagenome | 226 | Y |
| F024453 | Metagenome | 205 | Y |
| F040421 | Metagenome | 161 | Y |
| F046123 | Metagenome | 151 | Y |
| F056226 | Metagenome | 137 | N |
| F072934 | Metagenome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212118_100021821 | F046123 | N/A | CWYWIEAEEKCIFDEDDPEREFLLIDEFKDIDPKTYKERMEWLKGLGLMSLYRAVKAGMVKEQRTLGDFGLAVMSHE |
| Ga0212118_1000218214 | F019588 | GGAGG | MGGEKRIEEEVKEVLERLKVPYSVEIVIVDDKSGKVVFRWRRGRGNLVRGMQKTIEVLDRKMGIPVKDLLK |
| Ga0212118_1000218215 | F040421 | N/A | MREERVRAITMLTLAFTIGFKSIILFLQHSFGFAFTLFLLAWTCICFAFPDNLIGASIGQDLKLGEVIEKWVGRRELKRK |
| Ga0212118_1000218216 | F014691 | GGAGG | MKGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSLANTSSIIPTLTSFLPYIALVVILAMAIGVFLSLVKMR |
| Ga0212118_1000218219 | F017081 | GGAG | MVERGRKWWWKGICILGTLILLVATAQAIDITEITATETQIKITIANATSSGYIFVSPSNTSFPYAYSHQGNGTYTITATFLKPNNTYYVKVCDNENCSDAISVNVSKEEELVEQNFTTQFNNLMQGGNLLNISKLGEAIPSVYTSLLTDMFWAMFFGVIFLAYWIRQEDVMLPSVTGLIAGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR |
| Ga0212118_1000218220 | F056226 | AGGAGG | MRAYDILLFLVCLEASIGFVASIDLFSTTYVDPSAVQLTDWNVQEIQNQSSEPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPMEVALLFQGAVYLIYVWAIIQFLSGRSVKYME |
| Ga0212118_1000218222 | F007460 | AGGTGG | MDDEEGMGVGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTNVVGIGETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW |
| Ga0212118_1000218224 | F024453 | AGGAGG | VKMEIPERDGIVMYFAILQNLSQRPDLTDLERQALDFASSLLYQSIYSEEISEVGEEVKSVREEGREGDMEKVRSVHELAQVRRANAEQQGASR |
| Ga0212118_100021827 | F019935 | AGG | MPKVKETASRTVVHVGDLWRRYHRASPKTKMRWKFRIKDVGRLKHSELILCKPPNGMWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENGDLRGWKLVFRGV |
| Ga0212118_100021829 | F072934 | GAGG | MVEIDIDKLLADEEIREKMNEWNREKAKRRLEGMKNLSKPHRRYLEKIASGEWKVW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |