Scaffold Ga0212118

Basic Information
Taxon OID	3300022552 Open in IMG/M
Scaffold ID	Ga0212118_10002205 Open in IMG/M
Source Dataset Name	Guaymas_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022552 Open in IMG/M

Scaffold ID

Ga0212118_10002205 Open in IMG/M

Source Dataset Name

Guaymas_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13664
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (69.23%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

13664

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (69.23%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin, Gulf of California

Coordinates

Lat. (^o)

27.0078

Long. (^o)

-111.4071

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033663	Metagenome	176	Y
F048033	Metagenome	148	N
F057026	Metagenome	136	Y
F057809	Metagenome	135	N
F093027	Metagenome	106	N
F096388	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000220510	F048033	AGGAGG	MIVTRLGDMIVVNIDKDNFYCEREGSSLVDIWEEHARYIGEEDTLYVRQVEGESLSEDMQKLIKNFRNAGKTIEYLDRDRYDAHKGEVRFHTENFENEE
Ga0212118_1000220512	F033663	AGGAG	MQQEFSKENVTQVYGIRCKIDGEKIQDWDYDSLTNITFLYKQRLALFDDIQEDGMAVPEFFFEVKRDMLMLRDLVLGKFNILLVIEEEN
Ga0212118_1000220513	F057026	GGAGG	MGGDEQILVLEEMVCLFEEAMEGLKSAYEATEDENQKSKLTGGILVFEFVMNLMKQKMELLENEEIGYI
Ga0212118_100022055	F093027	N/A	MAGNNLWEIVPLLQSPIIINIHKEEEMKLGILSVLIALVLCIGSVSAFSSIDYSIQASDAVVSVDMRYSSILDNETMLGSQVVRLDHMDVTSVGIIMGDDTGVVLNNTLKAVPVRSCLISSGMINQNFASAVRTNESYDLGVTGFRADGRIMDLTSDVQAEQGALSHVVRGQVAGSIGMGLITQTPTNRFESIIRSRSALQNVVMNANWQTPQPAVEIEVPSSDISSLCVWATQSSYPVFPISA
Ga0212118_100022056	F057809	AGAAG	MQAWEIETRKGVSLFVGIPYIPTFRYTHCVVEDSWRNAWQPPNTIWRKNFSFGVATAREQLAEEFLATGYTHFLHLDCDIVLRQDTIARMLELDADVVVARYHDKSPLRLPQAFRHSQVPFRRDGPIDFKTNEIFEFPRPDGDVLLSGLGCVLVKREVFEKLKRPFYLFSSEHEDLDDYDRVSEDFFFLLKVQNEAKAKVIYAPSISVGHVGEVIVWDKDNIQFI
Ga0212118_100022059	F096388	N/A	MIKVPILDNREDRNWFHQFEHSVYTMLGGNNKLVERKLKQDMKLLKWREWWKNPRKKIDLLSGTEDGYRWRVRLLVNSFGDMSVVFDFS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212118_10002205

Overview

Ecosystem & Geography

Associated Families

Sequences