NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10003406

Scaffold Ga0212118_10003406


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10003406 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10782
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (91.30%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → unclassified Methanomicrobia → Methanomicrobia archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023017Metagenome211Y
F035145Metagenome172Y
F049343Metagenome146Y
F066330Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000340612F049343AGGAGGVVRWSRLRDKLKRGEWYAFSAVCFLAGVVVGKGITTLGRAEPVLVLTGVGAVLLAYWLALLTATIIAEIKEAPKTI
Ga0212118_1000340615F035145AGGAGGLEKLSAFMRRDYNLKTIITEECCDLMRVEVICFTAKTSFPLLSLTYNKLTDNFVLTIERKFITQHSTLKALIEALRGVEEVVRNDERRTERGDM
Ga0212118_1000340623F066330N/AMAEGKRRKEGREVVVSVALPIEEYLRLEEAVMRKHGRKRGVFGEFVREAIKRAVDEVLQQ
Ga0212118_100034068F023017GAGGMRLKKEKREQMKQKILEFLKNADGHIASIPMLARAIQASSPTAKSIVFELEVERRVSVVMLGGQYMVRLEEEV
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