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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022552 Open in IMG/M |
| Scaffold ID | Ga0212118_10003477 Open in IMG/M |
| Source Dataset Name | Guaymas_combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10655 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (94.44%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin, Gulf of California | |||||||
| Coordinates | Lat. (o) | 27.0078 | Long. (o) | -111.4071 | Alt. (m) | Depth (m) | 2000 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009582 | Metagenome | 315 | Y |
| F011723 | Metagenome | 287 | Y |
| F016098 | Metagenome | 249 | Y |
| F016235 | Metagenome | 248 | Y |
| F024940 | Metagenome | 203 | Y |
| F024941 | Metagenome | 203 | N |
| F028993 | Metagenome | 189 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0212118_1000347715 | F009582 | AGGGGG | MPVRRGRREFVSGTGRGVKEARVDVILQRLNENIGGEIKAYPSHIYRYGVNNIFQRSLAYLFGWKSNGEPHKVAVTNAGLLKVAMSGAGFEDIDTLTGTAGVNWSSSLSFAWTPNRIRFEALDYPYLAKFSRDGITWSDEIYVDAGMPRDFDINAKYVKVRRYGGTDAQYFIIGMR |
| Ga0212118_1000347716 | F011723 | AGGGGG | MVIYNKGLSRENSTDDGKTIFTLTSKEEEKYKVRRIVITDVNSNPLIMEVWVERDRICESIPLEVVSDLAPERVIDLDVDIPVGHTFSVKIKPQSSGNQGSVRGWVEYEIVE |
| Ga0212118_1000347718 | F028993 | AGGTGG | MVDIVEKAVKKRSERIAVSETYYKEGVESPTKDWLEQFKKAKDRRNAGLRKAMDEGLFEAGAERVGTEGWKEATLAKADRWLTGATSEVANRRYEERMRDVAECIERARKAVEGMPTTTIEQRAERSKRFQIEMSKCMEEKKRRR |
| Ga0212118_100034772 | F024941 | AGGAGG | MAYNFWGRLGITKGEEFRKLLEKAWNLGWSQREFYREVRARGLGYRESLMREDWHRFGYVESARTYEGKLTQHIFFDEVVKKLHDKEGWSWKEIKEFLNERKDPRRWTPETKVKEKIYKSYLREALPEKADT |
| Ga0212118_100034773 | F016235 | AGGAGG | MSEEKIPSSPPLFRHKKGRHRHGYQRCVEFVGIDKNDDYFGEGFPLCAVIKFKRSIYRYTPRTYELARLLATLKILYGEEYMEELNALAEVEYVRMRRRAEWLTIFGEDSE |
| Ga0212118_100034775 | F024940 | AGGAGG | MEREIIHKKIRSIKELREFITDYLIEHSEMRAKAMISANINAVFYEQGWMDALRTLRDLLSKEGLLMYRYVESEEQERAEDKNRDTI |
| Ga0212118_100034777 | F016098 | GGAGG | MSEERKFIYMRRTRSGNGVRMRDGEIVYIASIRSLEAFLQGEQEYVVFAKMPNRIIPNEGNARNLIYTWCDKCQGGRFFHKISEDKWKCEMCGTERTATELIEKVRLILECD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |