NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10003528

Scaffold Ga0212118_10003528


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10003528 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10588
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F016098Metagenome249Y
F016235Metagenome248Y
F024941Metagenome203N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000352813F016098GGAGGMSEERRYVYMRKTRSGNGVRMRDGEIVYIASIRSLEQFLQGEQEYVAFARIPYRQIPNENNERNLIYTWCDKCGGLRFFRKISEDKWRCEMCGTERTARELIEKVRAILEAD
Ga0212118_1000352817F016235AGGAGMSEIKICSSPPLFSHKKGRHRQGYQRCVEFVGIDKNDDYFGEGFPLCAVIKFKRSIYRYTPRTYELARLLAALKILYGKEYMEELLVWTELEYMRMRRRREWLTHFGDGSD
Ga0212118_1000352818F024941AGGAGGMAYAFWGRLGLTRGEQYRQLLERAWNLGWSQRRFFREARARHLGYAEALMREDWHRFGYVESARTYSGKLTQHIFFDEVVKKLHDEKKWSWKEIKEFLNERKDPRKWTPETKVKERIYKSYLKEALPEKADT
Ga0212118_100035283F011723AGGAGGMVIYNKGLSRDNSTNEGKEIFSLTSKEEEKYKVRRIVITDVVANPLIMEIWLERDRIGENIPLEVASDIAPERVIDLDVDIPVGYTFSVKIKPQTSGNQGSVRGWVEYEIVG
Ga0212118_100035284F009582GAGMVRRRRRREFIGGTGRAVKEARVDVVLQRVNEKIGSELDVSPSHIFRYGVNNIFQRTFAYLLGWKTNGEPQKVAVTEGGLVKVGIAGAGFEEIDVLKGTATVEWSDVLEFNFVPNRIRFEGLDYPYVAKFSKDNVTWSEEIYIDEGTPRDYDICAKYIKVKRYGGTDARYWIVGMR
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