Scaffold Ga0212118

Basic Information
Taxon OID	3300022552 Open in IMG/M
Scaffold ID	Ga0212118_10003592 Open in IMG/M
Source Dataset Name	Guaymas_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022552 Open in IMG/M

Scaffold ID

Ga0212118_10003592 Open in IMG/M

Source Dataset Name

Guaymas_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10498
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (95.24%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

10498

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (95.24%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)	Depth (m)	2000
Location on Map

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Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin, Gulf of California

Coordinates

Lat. (^o)

27.0078

Long. (^o)

-111.4071

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009582	Metagenome	315	Y
F011723	Metagenome	287	Y
F016098	Metagenome	249	Y
F016235	Metagenome	248	Y
F024940	Metagenome	203	Y
F024941	Metagenome	203	N
F028993	Metagenome	189	N
F040961	Metagenome	160	N
F067298	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_1000359217	F067298	AGGAGG	MVVVVKEEDVGKIIRAFTLKRRIRELEKQIGELQRRKAELEEEYADLGVEIE
Ga0212118_1000359218	F009582	N/A	MVEARRRREFVGGTGRAVKEARVDVILQRLEEKIGNELNVFPSHIYRYGVNNIFQRSFAYLLGWKANGEPQKVAVTSGGLLKIAVSGSGFEEIDTLEGTATVTWSSTLSFAWTPNRIRFEAVDYPYLAKFSTDGVTWSDAVYVDGDVPRDFDINARYVKVRRYGGTNATYFIIGMR
Ga0212118_1000359219	F011723	AGGAGG	MVIYNKGLSRDNSTDEGKTIFTLTSKEEEKYKVRRIVITDVVTNPLVMEVWIERDRISENIPLEVVADATPERIIDIDAEIPVGYTFKVIIKPQSSGNQGSVRGWIEYEIIG
Ga0212118_100035922	F024941	AGGAGG	MAYAFWGRLGITKGEQYRQLLERAWNLSWSQRRFFREARARGLGYAETLMREDWHRFSYVESAKTYHGKLRVHIFFDEVVKKLREEEGWTWSEIREFLKERKQPSKWTPETKAKEIVFEKYAKQAFPELYP
Ga0212118_1000359221	F028993	AGGTGG	MGKIVEKAVKKRKERIAVSEAYYKEGVESPSKDWLEEFKKAKDRRNAGLRRAMEEGLFERGAERVGTDGWQRATLNKADRWLTGATSEEANEKYESAMADVEECIERARKAVEGMPTTTVEQRAEKSKRFQIEMAKCMEAKKRGR
Ga0212118_100035923	F016235	AGGAGG	MSEIKIPSSPPLFSHKKGRHRHGYQRCVEFVGIDKNDDYFGEGFPLCAVIKFKQSIYRYTPRTYELARLLATLKVLYGEEYMEELLAWTELEYVRMRRRAEWLTLFGDGSE
Ga0212118_100035924	F040961	GAG	MVNAVECRWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFDFTDADIAKCEELAWLYVEF
Ga0212118_100035926	F024940	GAG	MEREIIHKKIRSIKELREFITDYLIEHSEMRAKAMLSQNTFVIAYEQGFLDALKTVRDLLSKEGLLMYRYVYEEKREREEDENRDTF
Ga0212118_100035928	F016098	AGGAGG	MSEERKYVYMRKTQSGQGVRMRDGEIVYIASIRSLEQFLQGEREFVAFAKIPYRQIPNENNERNLIYTWCDKCGAGRFFRKVREDMWKCETCGTERTTTDLIEKVRSILETD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212118_10003592

Overview

Ecosystem & Geography

Associated Families

Sequences