NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10004353

Scaffold Ga0212118_10004353


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10004353 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9468
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F011723Metagenome287Y
F016098Metagenome249Y
F040961Metagenome160N
F091133Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000435312F016098AGGMSEERRYVYMRRTRSGNGVRMRDGEIVYVASIRSLEQFLQGEAEYVAFVRMPYRQIPNESNERDLVYTYCDACGAGRFFQKVGEDKWKCLTCERVVTSTELIEKMRSIIQAD
Ga0212118_1000435315F040961AGGCGGMVNAIECRWSEEQAKGLITFLIAEKKRHEKDLHHIERSIERIKREFGFTDADIAKCEELAWLYVEW
Ga0212118_100043532F011723AGGAGGMVIYNKGLGTDNSTDTGKEIFSLTSKAEEKYKVRRVIITDVVSNPLYMELWVERDRIGESIPLEVISDATPERIIDVDAEIPVGYTFSIKIKPQNAGNQGSVRGWVEYEIIE
Ga0212118_100043533F009582GGAGGMVERRGRREFKSGTGRAVKEARVDIILQRLEENIGNEINAYPKHIYRYGVNNIFQRTFAYLLGWKSNGEPQKVGVTTGGLLKVAISGAGFEEIDTLEGTATVEWSDTLQFAWTPNRIRFEALNYPYLAKFSKDGLVWSDAVYVDGETPRDFDINAQYIKVRRYGGSDAKYMIIGMR
Ga0212118_100043537F091133AGGTGGMGIFDIWSSWTDWLSDWWDAFKDKIWDIKVELWGWVDDIAKYWVSKANEFFDILNHTWSDVEDLMEKAKDYADDIVTDAILKIDNWVGTFGETVAELWNKLEPYFSNVITPIENMINEIQNTKIPSLEDIINSVRGSVDNILNTDIPILNQSVSDLWNEANNIWNEIWNNIWVSLNNAWNDINNLWKTINEIPADIWNAITQGWDGFTDFLFEQGERFIEKMLDIEVGMDDVIEELKRRVGGEKK
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