Scaffold Ga0212118

Basic Information
Taxon OID	3300022552 Open in IMG/M
Scaffold ID	Ga0212118_10004409 Open in IMG/M
Source Dataset Name	Guaymas_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022552 Open in IMG/M

Scaffold ID

Ga0212118_10004409 Open in IMG/M

Source Dataset Name

Guaymas_combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9408
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9408

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin, Gulf of California
Coordinates	Lat. (^o)	27.0078	Long. (^o)	-111.4071	Alt. (m)	Depth (m)	2000
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin, Gulf of California

Coordinates

Lat. (^o)

27.0078

Long. (^o)

-111.4071

Alt. (m)

Depth (m)

2000

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007460	Metagenome	350	N
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F017081	Metagenome	242	Y
F019588	Metagenome	228	N
F040421	Metagenome	161	Y
F055335	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0212118_100044091	F019588	GGAGG	MGEEKRIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEILDRKIGIPVRDLLK
Ga0212118_100044092	F040421	GAGG	MREESVRAITMLMLAFIIGFKSIILFLQHSFGFALTLFLLAWTCICLAFPDNLIGASIGQDLKLGEVIEKWVRRRELKRK
Ga0212118_100044093	F014691	AGGGGG	MKGIGFVSAILILMFIVVAVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVRMR
Ga0212118_100044095	F017081	GGAG	MVERKGWWKGICTLGILTLLVATAQAIDITEITATETQIKITIANASSSGYIFVSPSNKSFPYAYSHQGNGTYTITTTFLKPNSTYYVKVCDNENCSDVVSVSVSEKEQLMSQNFTSQFNTLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGLISGSVLIVMLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_100044096	F055335	AGGAGG	MRAYDILLFLVCLEATIGFVSSLHVFPIDYVDTSAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALTMFLNMLVAIVAIYIPLTSVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME
Ga0212118_100044098	F007460	AGGTGG	MDDEEGIGMGAAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTSIVGVDETTPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQKGGGEEEEW
Ga0212118_100044099	F015290	AGGAG	MLNNKGQAGEIAVFVILAFMVAFAYIFISPIVQNIKDVVPIVADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0212118_10004409

Overview

Ecosystem & Geography

Associated Families

Sequences