NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10005139

Scaffold Ga0212118_10005139


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10005139 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8633
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014691Metagenome260N
F017081Metagenome242Y
F019588Metagenome228N
F019935Metagenome226Y
F072934Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000513911F019588GGAGGMSEGKRIEKEVEQIMKGLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKIGIPVKDLLK
Ga0212118_1000513913F014691AGGAGGMSKGIGFVSAILILMFIVVAVFTLSIAWSEIPVEPQADTSLANTSSIIPTLTSFLPYLALVVILAMAIGVFLSLVRMR
Ga0212118_1000513916F017081GGAGMWKRKWWRGICIFTVLAFLMATAQAIDITHITITSPTTIRVVIENANSSGYIFISPTNISFPYAFSHQGNGTYTITTTFLKPATWYFKACDNTGCSNVVSVDVSAEEQLLEQNFTSQFNTLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_100051394F019935AGGMPKVKETANRTVVHVGDLWRRYYRASPKTKRRWKFRIKDVGRLKHSELILCKPPNGDWQTYAWSFSKGEVKKGKRKLLIYDAKAFEILQKLKENDDLRGWKLVFKG
Ga0212118_100051397F072934AGGAGGMVEIDIDKLLADEEIRTKMNEWNREKAKRRLESMKNLSEPHRRYLEKIASGEWKVW
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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