NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10005341

Scaffold Ga0212118_10005341


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10005341 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8471
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029954Metagenome186N
F035145Metagenome172Y
F050065Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000534112F029954AGGMELKVREYKFNDGEKKVEYVVPPTNTPFFSVVFSKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKDEK
Ga0212118_100053415F035145AGGAGMLEKLLEFMRRDYNLKTIITEECHGLKKNEVICFTEITSFPLLTLTYSKKTGDFVLVIERRFIAHYSILKALTEAFNPHLQA
Ga0212118_100053416F050065GAGVSDVEQVKFIIAYLKGLLRDARRKGDKELVRYVGEIIRIYEARLQSQNDNN
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Institute for Fundamental Biomedical Research
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