NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10005428

Scaffold Ga0212118_10005428


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10005428 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8402
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F019588Metagenome228N
F024453Metagenome205Y
F040421Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000542811F040421GAGGMREESMRAITILTLAFIIGFKNIILFLQHSFGFAFTLFLLAWTCICFAFPDQLIGASIGQDLKLGEVIEKWVRRRELKRK
Ga0212118_1000542812F019588GGAGGMGEKKRIEEEVKEVLERLKVPYSVEIVIVDDKSGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPMKDLLK
Ga0212118_100054283F024453GAGGMKMKVSDRDISKEQDALKFRDEIVMSFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVMEGGESGREEEIQKDMEKVRSVHELAQVRRANAKQ
Ga0212118_100054285F007460AGGTGGMDDEEGMGMGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTNVVGIGETSPFAQALTLVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQQGGEEEEW
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