NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10005653

Scaffold Ga0212118_10005653


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10005653 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8208
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038026Metagenome166Y
F056227Metagenome137N
F098395Metagenome103Y
F100149Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000565315F056227N/AMEDKDNQVLVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHTDILSIFDAHNLEYLYVKYPQENREEVKIPSTQNYRDVNIDIRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE
Ga0212118_1000565317F100149N/AMYWSKEEEEILRSLWKKPDITAKIIKERHLPHRTINAIQKKASSLGLTKEKIKIDYEKVNEIII
Ga0212118_1000565319F098395GAGMKIEVIIPSDLEDFVKRIENLEEDNKLHDGLLHDVFENIDQMKKRLNELEKRIKHLESGREPYLKNNVLDE
Ga0212118_100056538F038026AGAAGMIDKNEDEYILIIEYEDRAERLLASSLKDLVQVMADTTLYNFEGKSKYFEQSYHVKIEIM
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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