NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10005830

Scaffold Ga0212118_10005830


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10005830 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8070
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023017Metagenome211Y
F029623Metagenome187Y
F029954Metagenome186N
F035145Metagenome172Y
F050065Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000583011F035145AGGAGGLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTVERKFITQHSTLKALIEALESVKEVMPNGMEQIER
Ga0212118_1000583012F050065GGAMNMLKATVSMEQQIMLAIAYLKGLLRDAKRRGDEEVARYIGEIIGVYEARLQSQNNNN
Ga0212118_1000583015F029954GAGGMELRTKEYKFNDGERKVEYVIPPTNTPFFSVIFGKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEERI
Ga0212118_100058304F023017GAGMRLKKEKREEMKVKIIEFLKNADGHIASIPMLAKAIQASSPTAKSIVFELEVERRVSVVMLGGQYMVKLEELEEGV
Ga0212118_100058306F029623GAGMNTYAKYVRARFERGNLIVEISKDAFKDAETRKEATKELQQIIKTYFGIRFFIRLSIVYAFTALFCACVALIIVLLK
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