NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10006381

Scaffold Ga0212118_10006381


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10006381 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7686
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014691Metagenome260N
F019588Metagenome228N
F040421Metagenome161Y
F055335Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000638112F055335AGGAGGMRAYDILLFLVCLEATIGFVSSLHVFPVDYVDASAVQTPQEWNLQEVKNQTASQSIFDKVMLATDMLFKALSMFFNMLVAIVAIYIPLTSVLGVPSEIALLLQGVVYLIYVWAIIQFLSGRSVKYME
Ga0212118_100063816F019588AGGAGGMGEEERIEEEVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPMKDLLK
Ga0212118_100063817F040421GAGGMKGERVRAITMLMLAFTIGFKSIILFLQHSFGFAFTLFLLAWTCICLAFPDNLIGASIGQDLKLEEVIEKWARKRELRRK
Ga0212118_100063818F014691AGGAGGMKGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQASTSLANTSTIIPTLTSFLPYIALVVILAMAIGVFLSLVRVR
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