NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10007848

Scaffold Ga0212118_10007848


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10007848 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6887
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F016235Metagenome248Y
F024940Metagenome203Y
F024941Metagenome203N
F091133Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0212118_100078481F091133GGAGGLGIFDIWDTWTDWLGDWWDAFKDKLSDIKAELWGWVDDIAKYWVKQADMFFDILKHTWSEVEDLMEDAKSYADDIVTDAVLCIDNWIQTFGETVAELWNKLEPYVSGLITPIQNALDTIQNIKIPSLEDITNTLKTTVDNVVNWDIPFLNQSVSDLWKEANEIWNEIWNNIWTSLNNAWSDINNLWKTINEIPADVWNAITQGWEGFTDFLFEQGERFVEKILDIDIPVDDIIKDLERKFKGGEK
Ga0212118_1000784810F016235AGGAGGMSEVKIPSSPPLFSHKKGRHRHGYQKCVAFVGIDKNDDYFGEGFPLCAVVKFKRPIYRYTPRTYELARLLATLKILYGEEYMEELLAWAELEYMRMRRRAEWLTLFGDGSE
Ga0212118_1000784811F024941AGGAGGMAYAFWGRLGITKGEQFRQLLERAWNLGWSQRQFFREARARGLGYAEALMREDWHRFGYVESARTYHGKLRVHIFFDEVVKKLREEEGWTWSEIREFLKERKQPSKWTPETKAKEIVFEKYAKQAFPELYP
Ga0212118_100078486F016098GGAGGMSEERKYVYMRKTQSGNGVRMRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRRIPNEDNARNLIYTWCDKCGGLRFFRKISEDKWRCEMCGTERTATELIEKVRSILEAD
Ga0212118_100078488F024940GGAGGMEREMIYKKIRKVKELREFITDALIEHAERRGSALIHGNNNLFYYEQGFLDALKTIRDLLSKEGLLMYRYVFEEKREREEDEHRDTF
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