NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10009951

Scaffold Ga0212118_10009951


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10009951 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6035
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014691Metagenome260N
F019588Metagenome228N
F019935Metagenome226Y
F040421Metagenome161Y
F046123Metagenome151Y
F072934Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1000995111F019935AGGVLLWVEMPKVKETANRTVVHVGDLWKRYHKASPKTKRRWKFRIKDVGRLRHSELILCKPPNGKWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENGDLRGWKLAFKG
Ga0212118_1000995114F046123GAGGMPCPYKEGSEYCWLCWYWIEAEEKCIFDEDDPEREFLLIDEFKNIDPKIYKERMEWLKGLGLMSLYRAVKAGMVKEQRTLGDFGLAVMSHE
Ga0212118_100099513F014691GGAGGMKGIGFVSAILILMFVVVAVFTLSIAWSEIPVEPQTNTSLANTSTIIPTLTSFLPYLALVVILAMAIGVFLSLVGVR
Ga0212118_100099514F040421GGTGGMREERVRAITMLMLAFIIGFKSIILFLQHSFGFAFALFLLAWTCICFAFPDNLIGASIGQDLKLGEVIEKWVRRRELRRE
Ga0212118_100099515F019588GGAGGMGEEKRIEEGVKEVLERLKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPVKDLLK
Ga0212118_100099519F072934GGAGGMAEIDIDKLLADEEIRGKMNGWNREKAKRRLESMKNLSEPHRRYLEKIASGEWKVW
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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