NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10012956

Scaffold Ga0212118_10012956


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10012956 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5234
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019935Metagenome226Y
F046123Metagenome151Y
F072934Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_1001295610F046123AGAAGGMEAIKMSCPYKEGSEYCWLCWNWMVSAEYCLYDEDDLQREFVLIDEFKDIDPQTYKERLEWIRGLGLLSLYRAVKARTVKGQRKEQRTLSDFGVVTSHE
Ga0212118_100129562F072934AGGAGGMVEIDIDKLLADKEIREKMNEWNRETAKRRLESMKNLSEPHRRYLEKIASGEWKIW
Ga0212118_100129565F019935AGAAGGMPKIKETTNRVVVHVGNLWRRYHRASPKTKKKWEFRIKDVGRTKHSELILCKPPNGEWQTYAWSFSKKQVKKGKRKLIVYDAKAYEILQKLKESGELRGWKLVFRG
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