NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212118_10013131

Scaffold Ga0212118_10013131


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10013131 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5193
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014691Metagenome260N
F017081Metagenome242Y
F040421Metagenome161Y
F055335Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_100131312F055335AGGAGGMRAYDILLFLVCLEATIGFVSSLHVFPVNYVDASAVQTPQEWNLQEVENQTASQSIFDKVMLATDMLFKALSMFLNMLVAIVAIYIPLTTVMGVPSEIALLLQGVVYVVYMWAIIQFLSGRSVKYME
Ga0212118_100131313F017081GGAGMVERGRKLWWKGICILGIFTFLIATAQAIDITEITATETQIKITIANATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKPNNTYYIKACDNENCSDVMSVNVSKEEKLVEQDFTAPFNNLIQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0212118_100131315F014691AGGAGGMSEGIGFVSAILILMFAVVTVFTLSIAWSEIPVEPQANTSLANTSSIIPTLTSFLPYLALVVILAMAIGVFLSLVRVR
Ga0212118_100131316F040421GAGGMREESMRVVTMLTLAFIIGFKSIILFLQHSFGFAFTLFLLTWTCICFAFPDQLIGASIGQDLKLGEVIEKWAKKRELRRK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.