NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10015413

Scaffold Ga0212118_10015413


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10015413 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4756
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029954Metagenome186N
F035145Metagenome172Y
F049343Metagenome146Y
F066330Metagenome126N
F084954Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0212118_100154131F066330AGGAGMAEEEKRRVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSKFVREAIRKAVEEVLQQK
Ga0212118_1001541310F049343AGGAGGMEWSRLRDKLRKGEWFAFSVVCFLAGVVAGKGITVLGRAEPVLALTAVGAVLLAYWLALLTATIIAEIKGAPKTI
Ga0212118_1001541311F084954GGCGGVSEACDARKMRKVANFLRKVKEILTHKSKGFNDMVMIATAIVSTVVVSIIGVYISSQIYDVTQLSSSSPFNTAMDSAIKIMNTTYPLIIVVAIAIIAGIIMTYLLGGFAVGGGKKGGGEA
Ga0212118_100154135F029954AGGMELRTKEYRFNDGERKVEYIIPPTNAPFISVLFSKRGEVRMIAIHQRVLEYHEAVVLMSLLCRVVKNEERIR
Ga0212118_100154139F035145AGGAGMLEKLSEFMRRDYNLKTIITEECCGLKKIEVICFTETTSFPLLTLTYSKKTGDFVLVIERRFIAQKSTLQALIEALEKVKEVMQNNGMEQIER
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