NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212118_10020395

Scaffold Ga0212118_10020395


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10020395 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4090
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F024940Metagenome203Y
F024941Metagenome203N
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_100203952F024941GAGMGGIGIYAYEEASRMAYAFWGRLGITKGEEYRKLLEKAWNLGWSQRQFFREARARGLGYAEGLMREDWHRFGYVGRARTYEGKLTQHVFFDEVVRKLHDKEGWSWKEIKEFLNERKDPRKWTPETKVKERIYKSYLREALPEKADT
Ga0212118_100203953F040961GAGMVNAVECRWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFRFTDADIAKCEELAWLYVEF
Ga0212118_100203954F024940GAGMEREIIHKKIRSIKELREFIIDYLIEHSEMRTKAMITANINVVFYEQGWMDALRTIRDLLSKEGLLMYRYTESEEEERAEDKNRDTF
Ga0212118_100203955F016098AGGAGGMSEERRYVYMRKTKSGNGVRIRDGEIVYIASIRSLEAFLQGEREFVAFAKMPYRQIPNENNTRNLIYTWCDKCQGLRFFRKISEDRWRCEMCGTERTTTELIEKVRSILNEGEQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.