NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10021863

Scaffold Ga0212118_10021863


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10021863 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3939
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F016235Metagenome248Y
F024940Metagenome203Y
F024941Metagenome203N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_100218632F024941AGGAGGMAYYFWGRLGITKGEEYRKLLERAWNLGWSQRRFFREARSRGLGYAEALMREDWHRFGYVESARTYEGKLRCHIFFDEVVKKLREEEKWTWSEIREFLKERKQPTKWTPETKAKEIVFEKYAKQAFPELYP
Ga0212118_100218633F016235AGGAGGMSEEKISSSPPLFSHKKGRHRHGYQKCVAFVGIDKNDDYFGEGFPLCAVIKFKHPIYRYTPRTYELARLLATLKILYGEEYMEELLTWTELEYVRMRRRAEWLTIFGDGSE
Ga0212118_100218635F024940AGGAGGMEREIIYKKIRSIKQLREFITDYLIEHSEMRTKAMLSQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEKREREEDEHRDTF
Ga0212118_100218637F016098GGAGGMSEERKVVYMRKTQSGNGVRIRDGEIVYIASIRSLEAFLQGEQEFVAFAKMPYRKIPNEDSARNLIYTWCDKCQGLRFFRKIVKDKWRCEMCGTERTARELIEKVRSILESD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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