NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212118_10024843

Scaffold Ga0212118_10024843


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10024843 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3671
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029954Metagenome186N
F035145Metagenome172Y
F049343Metagenome146Y
F050065Metagenome145Y
F066330Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_100248431F066330GAGMAEEEKGKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVREAIKRAVEEVLQQQK
Ga0212118_1002484310F035145GAGLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTVERKFITQPSTLKALIEALESVKEVMLNGMEQIER
Ga0212118_1002484311F049343AGGAGGMEWSRLRDKLRKGEWHIFSVVCFLVGVVAGREITLLAKPEPILALIGVGAGVLAYLLLLLTATIIAEIKERRKAPKTI
Ga0212118_100248436F029954GAGGMELRTKEYKFNDGERKVEYVIPPTNTPFFSVIFGKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEERIQ
Ga0212118_100248439F050065N/AMLKATASMEQIMLTIAYLKGLLRDAKRRGDKELVRYVGEIIGVYEARLQSQNNNN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.