NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10092525

Scaffold Ga0212118_10092525


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10092525 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1783
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016235Metagenome248Y
F024940Metagenome203Y
F024941Metagenome203N
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_100925253F024940AGGAGGVEREIIHRKIRSIKELREFITDYLIEHSEMRTKAMLSQNTFVIAYEQGFLDALKTIRDLLSKEGLLMYRYVFEEEQKREEDENRDTF
Ga0212118_100925255F040961GAGMVNAPECRWSEEQAKGLLTFLIAEKKRHERDIHNIERSIQRIKREFNFTDADIAKCEELAWLYVEF
Ga0212118_100925256F016235AGGGGGMSEEKEPSSPPLFFHKRWSHRRGYQKCVKYIGIDKNNERFGGGFPLCAVIKFRIPVHRYTPRTQEIAKLLATLRILYGEEYMEELLALAELEYVRMRRRRAWLTHFGDGLD
Ga0212118_100925257F024941AGGAGGMAYAFWGRLGLTKGEEYRKLLERAWNLGWSQRQFFREARARGLGYAEKLMREDWHRFGYVESARTYEGKLTQHVFFDEVVKKLHDKEGWSWREIVDFLNERKDPRRWTPETKVKERIYKSYLKEALPEKADT
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Institute for Fundamental Biomedical Research
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