NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212118_10111461

Scaffold Ga0212118_10111461


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10111461 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1605
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057809Metagenome135N
F093027Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_101114611F093027AGGAGGMKLGILSVLIALVLCIGSVSAFSSIDYSIQASDAVVSVNMKYSNILENETILGSQVVRLDHMDVTSAGMIMGDDTGVALNNTLRAVPVRNCLISSGMINQNFASAVRTNESYDLGVTGFRADGRMMDLASDVQAESGALSHVVRGQVAGSVGMGLITQTPTNRFESIVHSRSALQNVVMNANWQTPQPAVEIEVPSSDISSLCVWVTQSSYPVFPI
Ga0212118_101114612F057809AGAAGMQAWEIETRKGVSLFVGIPYIPTFRYTHCVVEDSWRNAWQPPNTIWRKNFSFGVATAREQLAEEFLASGYTHFLHLDCDIVLRQDTIARMLELDADVVVARYHDKSPLRLPQAFRHSQVPFRRDGPIDFKANEIFEFPRPDGDVLLSGLGCVLVKREVFEKLKRPFYLFSSEHENLDDYDRVSEDFFFLLKVQNEAKAKVIYAPSISVGHVGEVIVWDKDNIQFI
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