NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0212118_10167981

Scaffold Ga0212118_10167981


Overview

Basic Information
Taxon OID3300022552 Open in IMG/M
Scaffold IDGa0212118_10167981 Open in IMG/M
Source Dataset NameGuaymas_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1262
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Hydrothermal Vent → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin, Gulf of California
CoordinatesLat. (o)27.0078Long. (o)-111.4071Alt. (m)Depth (m)2000
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016098Metagenome249Y
F024940Metagenome203Y
F040961Metagenome160N

Sequences

Protein IDFamilyRBSSequence
Ga0212118_101679812F016098AGGTGGMSEERKFVYMRKTQSGNGVRMRDGEIVYIASIRSLEAFLQGEREFVAFAKMPNRRIPNEDNTRNLIYTWCDKCQGLRFFRKVGEDKWRCETCGTERTATELIEKVRSILEAD
Ga0212118_101679814F024940AGGAGGMEREIIHKKIRTIKELREFITDYLIEHSEMRTKAMLSQNTFVITYEQGFLDALKAIQDLLSKEGLLMYRYIINEEEERAEDKNRDTF
Ga0212118_101679815F040961AGGCGGMVNAAECRWSEEQAKGLLTFLIAEKKRHERDIYNIEQSIQRIKREFDFTDADIAKCEELAWLYVEF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.