Scaffold Ga0212124_10010485

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212124_10010485

Scaffold Ga0212124_10010485

Overview

Basic Information
Taxon OID	3300022553 Open in IMG/M
Scaffold ID	Ga0212124_10010485 Open in IMG/M
Source Dataset Name	Powell_combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6411
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	50.0621	Long. (^o)	-124.7214	Alt. (m)		Depth (m)	150
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056992	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212124_100104855	F056992	AGTAG	VDPSSLSLLSKLVDTDQAEVVDARATGGEVIRIPMRQQILATQALSAVGDNLSWFMEQVTGRGYQKAEEVYDAGFTVREPGHQAYGMKVTAEANIVIIARVALLEDETIFHRYVDYLRTGVYL

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