NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212124_10011984

Scaffold Ga0212124_10011984


Overview

Basic Information
Taxon OID3300022553 Open in IMG/M
Scaffold IDGa0212124_10011984 Open in IMG/M
Source Dataset NamePowell_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5914
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0621Long. (o)-124.7214Alt. (m)Depth (m)150
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024280Metagenome206N
F051037Metagenome / Metatranscriptome144N

Sequences

Protein IDFamilyRBSSequence
Ga0212124_100119841F051037N/ACKPRLRARTAVWRGSARIGYNPAAMVKLRDHEKMKALWPPQFEGPHSFWDKHHPGGEWGDLLQVKWVVPDRKGESPYIKIIIHWDEVDFRGVMTHEDTVFLKKVYETMKSRGIRKTLEEVGNLQVDF
Ga0212124_100119843F024280N/AMALITIESRKARPTCAICETERVEAVATPAGRFTLCPDHVIKFASRRLSPEQLAMVIRKKQPPASAWAPSACALCATPADLIFDEQEGLFAFCQPHFLRYVLLALRPHEHAILAGRLTPEQFLTRLSAKYYFEGQADQPYIEDLDDPAYSVTTPLWEG
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