NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212088_10011074

Scaffold Ga0212088_10011074


Overview

Basic Information
Taxon OID3300022555 Open in IMG/M
Scaffold IDGa0212088_10011074 Open in IMG/M
Source Dataset NameAlinen_combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14190
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (73.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameFinland: Lake Alinen Mustajarvi
CoordinatesLat. (o)61.5637Long. (o)22.044Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020298Metagenome / Metatranscriptome224Y
F059611Metagenome133Y
F060589Metagenome132Y
F079582Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0212088_1001107418F059611GGAMKDFSLPYITAKRLLDEYYQAMIAQDKALACQIANNLVEMTLKLEDVAHAD
Ga0212088_1001107420F060589AGGALNEERYRHQCAVRQLIMWRRQWGLKAFREYMNKYKEKLGWQLIRDFEDQWTKGNRADEKGEWK
Ga0212088_1001107424F079582GGAMHDRWYEPEDDYMDSDELQAEVADLMKDEYNPCKWENFNDAFAATQNKDDIAFIEQALEKRDFEALGRKLWNMSYEYMENFATGKVTGQY
Ga0212088_100110747F020298N/AMTSPNIYVPYPTPQDEQQLQADVSAIVYQPGVPQELQDQYTNMINSPTFVDDVNEAEANSDSMANE
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